Place a rack in the center of your oven and preheat the oven to 400 degrees F. Roast the spaghetti squash according to this recipe for Roasted Spaghetti Squash. When cool enough to handle, pull the squash strings out of the squash's center with a fork and transfer to a large mixing bowl. The squash strings should look like spaghetti.: As the oven warms to 400 degrees F, you will notice the air fill with a sweet, nutty aroma as the squash roasts, signaling caramelization of its natural sugars. The flesh should become tender enough that a fork glides through and the strands separate cleanly, resembling al dente pasta. This roasted scent and the slightly toasted edges are clues that the squash is done. Gently scraping the strands releases steam and that roasted perfume, and transferring them to a large bowl keeps them from cooling too quickly. A common mistake is under roasting which leaves the strands dense and chewy, so if the fork meets resistance, return the squash to the oven for a few more minutes.
Reduce the oven temperature to 350 degrees F. Heat the olive oil in a large, deep skillet over medium high. Add the turkey, onion, bell pepper, salt, and black pepper. Cook, breaking apart the meat, until meat is browned and the vegetables are tender, about 8 minutes. Add the drained tomatoes, garlic, Italian seasoning, and red pepper flakes. Let cook until most of the liquid from the tomatoes has cooked off, about 4 minutes, and then add the reserved squash. Cook and stir until most of the remaining liquid has cooked off, about 1 to 2 minutes more, increasing the heat if needed. Stir in 1/2 cup of the shredded cheese. There may be some liquid remaining in the pan.: The sizzle when the extra-virgin olive oil hits the pan is your first hint that flavors are building; as the ground turkey browns you will smell a toasty, savory note and see small caramelized bits forming on the pan surface. The diced red onion and green bell pepper should soften and release a sweeter aroma, while the salt helps draw out moisture to intensify flavor. Browning the meat adds Maillard complexity, which deepens the filling's taste. Avoid overcrowding the pan, which can steam the ingredients instead of browning; if your skillet seems crowded, cook in batches to achieve proper caramelization.
Lightly coat a deep 8×8-inch baking dish or 2-quart casserole dish with nonstick spray. With a slotted spoon, scoop the squash mixture into the pan in an even layer, discarding any excess liquid (some in the pan is OK—just not too much). Bake, uncovered, for 20 minutes. Remove from the oven and sprinkle with the remaining 1/2 cup cheese, and then return to the oven and bake until the cheese melts, about 5 to 10 additional minutes. For an extra-golden-brown top, place the casserole under the broiler for a few minutes. Remove from the oven, sprinkle with parsley and/or basil, and let rest 5 minutes. Serve hot.: When you add the drained diced tomatoes , the mixture will hiss briefly and then settle into a saucy simmer; the garlic will release a warm, aromatic perfume that blends with the herbs. Cooking until most of the tomato liquid evaporates concentrates the flavors and prevents a watery casserole, while the slightly reduced tomato base clings to the browned bits from the pan. Folding in the reserved spaghetti squash after reduction ensures the strands absorb flavor rather than sit in excess liquid. A frequent error is skipping the reduction, which results in a soggy texture after baking.
Cook and stir until most of the remaining liquid has cooked off, about 1 to 2 minutes more, increasing the heat if needed. Stir in 1/2 cup of the shredded cheese. There may be some liquid remaining in the pan: At this point, increase your attention to visual cues, the mixture should tighten and cling together, releasing a concentrated aroma of herbs and tomato. The brief final cook evaporates residual moisture, leaving a cohesive filling that will hold up in the casserole dish. When you stir in the reserved 1/2 cup of mozzarella or provolone , it lends creamy silkiness that helps bind the strands and meat without overpowering the squash. If you see puddles of liquid, continue to cook a little longer; the goal is a moist but not soupy filling. Overcooking here can dry the mixture, so keep it balanced.
Lightly coat a deep 8×8-inch baking dish or 2-quart casserole dish with nonstick spray. With a slotted spoon, scoop the squash mixture into the pan in an even layer, discarding any excess liquid (some in the pan is OK—just not too much): As you spoon the filling into the prepared baking dish, listen for the soft gloop of the strands settling and watch for an even layer that will bake uniformly. Using a slotted spoon helps leave behind excess liquid, which prevents a soggy bottom while retaining enough moisture for a creamy interior. The evenness of the layer affects how well the top browns, so smooth gently without compressing the strands. A mistake is packing tightly, which makes the casserole dense instead of light and tender.
Bake, uncovered, for 20 minutes. Remove from the oven and sprinkle with the remaining 1/2 cup cheese, and then return to the oven and bake until the cheese melts, about 5 to 10 additional minutes: During the initial uncovered bake, the kitchen will fill with bubbling, savory scents and the surface will begin to set. You want to see edges lightly bubbling and the top firming, that indicates moisture has tightened and the casserole will hold its shape. After you add the remaining 1/2 cup of cheese , return to the oven to allow the top to melt into a glossy, inviting layer. Watch closely during the final minutes so the cheese melts and begins to brown without burning; broil briefly if you want a golden finish but monitor continuously to avoid charring.
For an extra-golden-brown top, place the casserole under the broiler for a few minutes. Remove from the oven, sprinkle with parsley and/or basil, and let rest 5 minutes. Serve hot: Sliding the dish under the broiler for a short time adds those toasty, browned notes and a crispness to the cheese that contrast wonderfully with the soft interior. You will smell a nutty, baked cheese aroma and see beautiful bronzing on top. Resting for about 5 minutes after baking lets juices settle and makes portioning cleaner, while the finish of chopped fresh parsley or basil brightens the palate with herbal freshness. Avoid leaving it too long, or the casserole will cool and the cheese will firm up making it harder to serve smoothly.